Project details
Real time PCR primer/probe sensitivity/specificity analysis
Company: Lawrence Livermore National Laboratory / DHS
Period: 2007 - 2007
Duration: 16 weeks (full-time equivalent)
Developed an automated system for predicting the sensitivity and specificity of real-time PCR primer/probe combinations. The system identifies predicted matches found in public sequence databases and compares these with the assay’s target. Web interface built in Perl/CGI. Backend uses MySQL.
About me
Senior Software Developer at University of Utah
My skills
- JavaScript
- Java
- Python
- C++
- jQuery
- Machine Learning
- Bioinformatics
- Computational Biology
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All Gordon's projects
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Learning from the Utah Population Database
(click to see)
2014 - Current (2.0 years FTE)
Client: University of Utah, Dept of Human Genetics
Industry: Science
- Bioinformatics
- Java
- JavaScript
- Python
- jQuery
Developed an automated system for predicting the sensitivity and specificity of real-time PCR primer/probe combinations. The system identifies predicted matches found in public sequence databases and compares these with the assay’s target. Web interface built in Perl/CGI. Backend uses MySQL.
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Cancer genome analysis / variant calling
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2013 - 2014 (1.2 years FTE)
Client: Saint Jude Children's Research Hospital
Industry: Science
- Bioinformatics
- Computational Biology
- Java
- Python
Developed an automated system for predicting the sensitivity and specificity of real-time PCR primer/probe combinations. The system identifies predicted matches found in public sequence databases and compares these with the assay’s target. Web interface built in Perl/CGI. Backend uses MySQL.
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RosettaLigand
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2008 - 2013 (5.8 years FTE)
Client: Vanderbilt University
Industry: Pharmaceutical
- C++
- Computational Biology
- Python
Developed an automated system for predicting the sensitivity and specificity of real-time PCR primer/probe combinations. The system identifies predicted matches found in public sequence databases and compares these with the assay’s target. Web interface built in Perl/CGI. Backend uses MySQL.
2 pictures
-
Real time PCR primer/probe sensitivity/specificity analysis
(click to see)
2007 - 2007 (16 weeks FTE)
Client: Lawrence Livermore National Laboratory / DHS
Industry: Science
Developed an automated system for predicting the sensitivity and specificity of real-time PCR primer/probe combinations. The system identifies predicted matches found in public sequence databases and compares these with the assay’s target. Web interface built in Perl/CGI. Backend uses MySQL.
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Characterization of Xenopus tropicalis gene expression during development
(click to see)
2006 - 2006 (20 weeks FTE)
Client: Lawrence Livermore National Laboratory
Industry: Science
- Bioinformatics
Developed an automated system for predicting the sensitivity and specificity of real-time PCR primer/probe combinations. The system identifies predicted matches found in public sequence databases and compares these with the assay’s target. Web interface built in Perl/CGI. Backend uses MySQL.
