Project details
Cancer genome analysis / variant calling
Company: Saint Jude Children's Research Hospital
Period: 2013 - 2014
Duration: 1.2 years (full-time equivalent)
- Bioinformatics
- Computational Biology
- Java
- Python
Developing and automating large-scale analysis pipelines. These pipelines process DNA sequence data from human, mouse and flu, identify key mutations, and predict their structural and functional effects. These predictions play an integral role in the Pediatric Cancer Genome Project. See http://www.pediatriccancergenomeproject.org/site/.
About me
Senior Software Developer at University of Utah
My skills
- JavaScript
- Java
- Python
- C++
- jQuery
- Machine Learning
- Bioinformatics
- Computational Biology
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All Gordon's projects
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Learning from the Utah Population Database
(click to see)
2014 - Current (2.0 years FTE)
Client: University of Utah, Dept of Human Genetics
Industry: Science
- Bioinformatics
- Java
- JavaScript
- Python
- jQuery
Developing and automating large-scale analysis pipelines. These pipelines process DNA sequence data from human, mouse and flu, identify key mutations, and predict their structural and functional effects. These predictions play an integral role in the Pediatric Cancer Genome Project. See http://www.pediatriccancergenomeproject.org/site/.
3 pictures
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Cancer genome analysis / variant calling
(click to see)
2013 - 2014 (1.2 years FTE)
Client: Saint Jude Children's Research Hospital
Industry: Science
- Bioinformatics
- Computational Biology
- Java
- Python
Developing and automating large-scale analysis pipelines. These pipelines process DNA sequence data from human, mouse and flu, identify key mutations, and predict their structural and functional effects. These predictions play an integral role in the Pediatric Cancer Genome Project. See http://www.pediatriccancergenomeproject.org/site/.
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RosettaLigand
(click to see)
2008 - 2013 (5.8 years FTE)
Client: Vanderbilt University
Industry: Pharmaceutical
- C++
- Computational Biology
- Python
Developing and automating large-scale analysis pipelines. These pipelines process DNA sequence data from human, mouse and flu, identify key mutations, and predict their structural and functional effects. These predictions play an integral role in the Pediatric Cancer Genome Project. See http://www.pediatriccancergenomeproject.org/site/.
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Real time PCR primer/probe sensitivity/specificity analysis
(click to see)
2007 - 2007 (16 weeks FTE)
Client: Lawrence Livermore National Laboratory / DHS
Industry: Science
Developing and automating large-scale analysis pipelines. These pipelines process DNA sequence data from human, mouse and flu, identify key mutations, and predict their structural and functional effects. These predictions play an integral role in the Pediatric Cancer Genome Project. See http://www.pediatriccancergenomeproject.org/site/.
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Characterization of Xenopus tropicalis gene expression during development
(click to see)
2006 - 2006 (20 weeks FTE)
Client: Lawrence Livermore National Laboratory
Industry: Science
- Bioinformatics
Developing and automating large-scale analysis pipelines. These pipelines process DNA sequence data from human, mouse and flu, identify key mutations, and predict their structural and functional effects. These predictions play an integral role in the Pediatric Cancer Genome Project. See http://www.pediatriccancergenomeproject.org/site/.
